Saturday, 7 January 2017

3 Phages Walk Into a Vibrio

Apostichopus japonicas, commonly known as the Japanese sea cucumber is a temperate shallow water species found along the coasts of south east Asia. Its common use is as an edible consumable and as such is considerably over fished. Sea cucumbers aquaculture is a rapidly growing, extremely profitable industry. The industry has the largest economic output for any single marine species in the whole of China. As with any aquaculture, disease has a serious negative effect on both yield and profit. Skin ulceration syndrome is one of the more serious diseases that affects cucumbers and is commonly caused by Vibrio species, in particular Vibrio splendidus.

At present antibiotics are used to control bacterial diseases, however, phage therapy is an alternative method which does not result in environmental pollution or antibiotic resistance. Li et al., sought to isolate and test the efficiency of phages that protect cucumbers against V.splendidus infection. Being the first study to assess the potential of a phage cocktail lytic to V.splendidus. 3 phages were isolated from raw sewage obtained from cucumber hatcheries. The sewage samples were introduced to pellets of V.splendidus which were then filtered through a 0.22 μm filter after a 24 hour incubation period. The presence of phages was then confirmed using the Double-Layered Agar Method. The phages were inspected using a Transmission Electron Microscope and their morphological features including head, tail and tail fibers were recorded. Cultures of V.splendidus were incubated in a 96 well plate for 6 hours with the turbidity of plates being visually examined to calculate the lytic capability of the 3 phages. The inhibition of bacterial growth was then tested using either a cocktail of all 3 phages in a ratio of 1:1:1 or each phage separately. A 96 well plate was inoculated and each phage dilution was added with a control for plate sterility, phage suspension sterility and bacterial culture included. All plates were incubated for 16 hours before the optical density being measured at 600 nm.

360 cucumbers were divided into 6 groups. Each group was divided into 3 tanks each housing 20 cucumbers. The cucumbers were fed for 60 days with each treatment being fed a separate diet of either an ‘unsupplemented’ control, antibiotic, all 3 phages or each phage separately. At days 20, 40 and 60 the levels of acid phosphatase and nitric oxide synthase were measured. 90 fresh cucumbers from the same source were selected and separated into 3 treatments; a blank control, an untreated group and a treated group. The treatment was phage injection by coelomic injection and was done to test the survival rate and enzyme activity in the coelomic fluid.

The electron microscopy of the phages revealed that all 3 belong to the order Caudovirales, with two belonging to the family Myoviridae and one belonging to the family Siphoviridae. The effects of each of the 3 phages on V.splendidus showed a significant decrease in the optical density at 600 nm compared to the control culture. For the ‘unsupplemented’ diet the survival rate was 18% whereas both antibiotic and phage cocktail treatments had 82% survival rates. The 3 phages individually showed far higher survival rates than the ‘unsupplemented’ treatment but not as high as the 3 combined. There was a significant difference detected between phage PVS-1 and PVS-3 but not between PVS-2 and the other phages. After the 60 days, there was no significant difference in weight gain or ingestion rate across any of the treatments. The levels of enzymes did significantly increase in cucumbers fed phages over the ‘unsupplemented’ treatment. There was however, no significant difference between antibiotic and ‘unsupplemented’ cucumber enzyme levels.

This study is very interesting and very useful for combatting current global problems. It follows on from a lot of previous studies and provides further evidence to support the move away from antibiotic use. Whilst showing that phage therapy is just as effective as antibiotics the authors also discovered 3 new bacteriophages lytic to V.splendidus and imaged them. The study uses proven microbiological techniques which are very robust and provide good, usable results in my opinion. My main qualm with this study is the size of it. I feel whilst done very well the authors attempt to do too much in one study. If each experiment was done separately or less was done, then more time and resources could have potentially been spent on individual elements. Whilst this study serves its purpose well, allowing for the potential disease reduction of aquaculture species and the reduction of antibiotics in the environment, the potential for broader future study is low. 


Li, Z., Li, X., Zhang, J., Wang, X., Wang, L., Cao, Z. and Xu, Y. (2016). Use of phages to control Vibrio splendidus infection in the juvenile sea cucumber Apostichopus japonicus. Fish & Shellfish Immunology, 54, pp.302-311.

http://www.sciencedirect.com/science/article/pii/S1050464816301772

6 comments:

  1. Hi Scott,

    Thanks for your review. In the study they found that the cocktail of the three phages gave a higher survival rate than the individual phages did alone. Why do you think this could be?

    Thanks, Tabby

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    1. Hi Tabby,

      Thank you for your question. This was something that I had not previously thought about. The way I see it, it is very similar to antibiotics resistance. If you have a monoculture of only one phage, then the bacteria in this situation V.splendidus are able to evolve resistance to the phage. From the paper, phage PVS-1 and PVS-2 were lytic to 4 isolates of V.splendidus whereas PVS-3 was only lytic to three isolates. So as you can see, one isolate has already evolved resistance to a phage. If a more diverse cocktail of phages is used then V.splendidus is less likely to be able to evolve resistance as it must simulateously evolve resistance to 3 different phages.

      I hope my explanation makes sense to you. If not or if you're still interested in the topic I have attached a reference for you to have a look at. Whilst the study looks at Pseudomonas aeruginosa, it answers your question well and goes on further to look at using phages as a biological control agent.

      Cheers,
      Scott

      Betts, A., Gifford, D., MacLean, R. and King, K. (2016). Parasite diversity drives rapid host dynamics and evolution of resistance in a bacteria-phage system. Evolution, 70(5), pp.969-978.

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  2. Hi Scott,

    Thanks for a really interesting review. The opportunity for aquaculture to move away from antibiotics and on to other alternative methods is a positive one in my opinion, and with growing research - very interesting and hot topic!
    In your last paragraph you mention the size of the study is too big, whilst 360 cucumbers across 6 treatments does seem to be a lot, aren't scientists always saying 'you can never have too much research?' You said previously this is the first paper into the use of phages against V. splendidus, so perhaps the authors were attempting to do a large baseline study? In your opinion which elements could have been conducted better?
    Just a thought, would be interesting to hear your opinion.
    Many thanks,
    Ellie

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    1. Hi Ellie,

      Thank you for reading my review. You appear to have misinterpreted my meaning and I apologise if I wasn't clear. I'm not criticizing the number of replicates the authors have used. I'm criticizing the number of separate things they tried to look at. The authors:
      (1) isolated and purified 3 new phages
      (2) morphologically observed the phages
      (3) determined the host range and lytic capabilities of the phages
      (4) tested the inhibition of bacterial growth by the phages
      (5) looked at the effect of feeding individual phages or a cocktail on the performance of sea cucumbers
      (6) looked at the effect of individual phages or phage cocktails on enzyme activity in the coelomic fluid of the cucumbers
      (7) looked at 5 and 6 but if the phages were coelomic injected rather than fed to the cucumbers
      (8) finally they determined the activity of the immune-related enzymes in cucumbers

      On reflection I may have been a little critical of this. I thought the study was very good and done well. I just felt that the authors attempted to do so much. If they had done it over multiple studies then more time could have been input into each part. Some individual parts are paper worthy in themselves. However, they could have been limited by time, funding or a multitude of other factors which is why they may have done it in this way. It may be more me looking for a criticism than one actually being there.

      I do not think this was an attempt to do a large baseline study as you suggest. Phage therapy isn't a new concept, they're just the first to do it for V.splendidus. That, in my opinion, isn't enough for it to be a base line study.

      I hope this answers your questions and has made any of my ambiguities clear.

      Cheers,
      Scott

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  3. Hi Scott,

    Thank you for what was a very enjoyable and thought-provoking post. The isolation of a lytic phage against V. splendidus (let alone three) is in itself an intriguing accomplishment, and I was unaware that it could act as a pathogen to sea cucumbers. It is fascinating to read Chinese research where echinoderms are a farmed food source, something that I had previously not considered as a phylum at risk to microbial pathogenesis in aquaculture. This seems great news for this particular research group, but due to the host specificity of most phages I am sceptical that a broad-spectrum phage cocktail could be commercialised for use against other V. splendidus strains (the genome published by Le Roux et al. 2009 shows extraordinarily high genotypic diversity between strains). Perhaps this is why a phage cocktail was more successful in combatting the pathogen than single phages, (to answer Tabitha Figgins question)? The cucumbers may very well be colonised by multiple splendidus genotypes, resistant to some phages. It would be fascinating to see how much time and money went into to isolating and exploiting the phage in this study – perhaps a robust and reproducible protocol could allow aquaculture facilities around the world to design their own phage cocktails specific to their own strains? This would certainly mitigate against the problem of broad-spectrum antibiotics, if feasible.

    Thanks a lot,
    Davis

    Le Roux, F., Zouine, M., Chakroun, N., Binesse, J., Saulnier, D., Bouchier, C., ... & Buchrieser, C. (2009). Genome sequence of Vibrio splendidus: an abundant planctonic marine species with a large genotypic diversity. Environmental microbiology, 11(8), 1959-1970. http://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2009.01918.x/full

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    1. Davis,

      Thank you for reading my post. You appear to have guessed at why I picked this study. I agree with you that a broad spectrum phage cocktail will most likely not be commercialised due to the large genotypic diversity of V.splendidus strains. This is why I believe that this study does not allow for much further study. I failed to mention this in my review due to concentrating on V.splendidus but they did note that PVS-3 could infect V.cyclitrophicus which is of interest. I believe that using a phage cocktail with a larger diversity of phages combined with antibiotics may be a better approach. It will reduce the amount of antibiotics in the envirnoment but still reduce disease in aquaculture. My main criticism was that too much was done, maybe if they had done the isolation a a separate study they could have isolated far more phages. A robust protocol would be of much use I agree, however, I am unsure if this is feasible in the near future.

      Thank you for your comment,
      Scott

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